I believe what you’re looking for is an option to apply deposits in HB to a later invoice that has the total. This is not an option in HB, at least not at the moment. Perhaps, you could process the deposit and then another invoice for the remaining balance only and make a note on it that the total is $x minus the deposit of $x perviously paid on (date/invoice).Â
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As for having the deposit go to a different account in QB, HB only supports one account for payments to go to, you could however, have another account in QB where you manually transfer the deposits to when they hit your main HB/QB bank account.Â
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Hope that helps!Â